Package es.imim.DISGENET.validation

Class NetworkValidation

java.lang.Object
es.imim.DISGENET.validation.NetworkValidation
public class NetworkValidation extends Object

  • Constructor Summary

    Constructors
    Constructor
    Description
    NetworkValidation()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    static boolean
    isExpandedWithGenes​(org.cytoscape.model.CyNetwork cyNetwork)
    Checks if the variant network is already expanded.
    static boolean
    isForeignNet​(org.cytoscape.model.CyNetwork cyNetwork)
    Checks if the current network is original DISGENET network or not.
    static boolean
    isProjectionNet​(org.cytoscape.model.CyNetwork cyNetwork, String interaction)
     
    static boolean
    isVariantNet​(org.cytoscape.model.CyNetwork cyNetwork)
    Checks if the current network is a variant-disease network.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • NetworkValidation

      public NetworkValidation()

  • Method Details

    • isVariantNet

      public static boolean isVariantNet​(org.cytoscape.model.CyNetwork cyNetwork)
      Checks if the current network is a variant-disease network.
      Parameters:
      cyNetwork - the network to check.
      Returns:
      true in case the network is a variant network or false in case there's no network or isn't a variant.

    • isProjectionNet

      public static boolean isProjectionNet​(org.cytoscape.model.CyNetwork cyNetwork, String interaction)

    • isExpandedWithGenes

      public static boolean isExpandedWithGenes​(org.cytoscape.model.CyNetwork cyNetwork)
      Checks if the variant network is already expanded.
      Parameters:
      cyNetwork - the network to check.
      Returns:
      true in case the variant network us already expanded false in case not.

    • isForeignNet

      public static boolean isForeignNet​(org.cytoscape.model.CyNetwork cyNetwork)
      Checks if the current network is original DISGENET network or not.
      Parameters:
      cyNetwork - the network to check the origin.
      Returns:
      true in case the network was formed in disgenet or false in case not.