Uses of Class
es.imim.DISGENET.gui.GuiParameters
Package
Description
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Uses of GuiParameters in es.imim.DISGENET.database
Modifier and TypeMethodDescriptionDatabase.getDiseaseAttributes(GuiParameters curParams)
DatabaseImpl.getDiseaseAttributes(GuiParameters curParams)
Database.getDiseaseList(GuiParameters curParams)
DatabaseImpl.getDiseaseList(GuiParameters curParams)
Case in gene-dis panelDatabase.getDiseaseListVariant(GuiParameters params)
DatabaseImpl.getDiseaseListVariant(GuiParameters curParams)
Case in var-dis panelDatabase.getDiseaseProjectionBySrc(GuiParameters curParams)
DatabaseImpl.getDiseaseProjectionBySrc(GuiParameters curParams)
Database.getDiseasesAssociatedToGenes(GuiParameters curParams)
DatabaseImpl.getDiseasesAssociatedToGenes(GuiParameters curParams)
Database.getGeneAttributes(GuiParameters curParams)
DatabaseImpl.getGeneAttributes(GuiParameters curParams)
Database.getGeneDiseaseNetworkBySrc(GuiParameters curParams)
DatabaseImpl.getGeneDiseaseNetworkBySrc(GuiParameters curParams)
Database.getGeneIdList(GuiParameters params)
DatabaseImpl.getGeneIdList(GuiParameters curParams)
Case in gen-dis panelDatabase.getGeneList(GuiParameters curParams)
DatabaseImpl.getGeneList(GuiParameters curParams)
Case in gene-dis panelDatabase.getGeneListVariant(GuiParameters params)
DatabaseImpl.getGeneListVariant(GuiParameters curParams)
Case in var-dis panelDatabase.getGeneProjectionBySrc(GuiParameters curParams)
DatabaseImpl.getGeneProjectionBySrc(GuiParameters curParams)
DatabaseImpl.getVariantAttributes(GuiParameters curParams)
Database.getVariantDiseaseNetworkBySrc(GuiParameters curParams)
DatabaseImpl.getVariantDiseaseNetworkBySrc(GuiParameters curParams)
Database.getVariantList(GuiParameters curParams)
DatabaseImpl.getVariantList(GuiParameters curParams)
Case in var-dis panel -
Uses of GuiParameters in es.imim.DISGENET.gui
Modifier and TypeMethodDescriptionvoid
MainPanel.setParams(GuiParameters<Object,Object> params)
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Uses of GuiParameters in es.imim.DISGENET.internal.automation
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Uses of GuiParameters in es.imim.DISGENET.internal.tables
Modifier and TypeMethodDescriptionDisGeNetCyTableDisease.getParams()
DisGeNetCyTableGene.getParams()
DisGeNetCyTableVariant.getParams()
Modifier and TypeMethodDescriptionvoid
DisGeNetCyTableDisease.setParams(GuiParameters params)
void
DisGeNetCyTableGene.setParams(GuiParameters params)
void
DisGeNetCyTableVariant.setParams(GuiParameters params)
ModifierConstructorDescriptionDisGeNetCyTableBase(GuiParameters params)
DisGeNetCyTableDisease(GuiParameters params)
DisGeNetCyTableGene(GuiParameters params)
DisGeNetCyTableVariant(GuiParameters params)
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Uses of GuiParameters in es.imim.DISGENET.network
Modifier and TypeMethodDescriptionvoid
NetworkBuilder.buildDiseaseNet(GuiParameters curParams)
Generic function to create disease networkvoid
NetworkBuilder.buildGeneDiseaseNet(GuiParameters curParams)
Get the gene/disease net information from the database and call generic function to build netvoid
NetworkBuilder.buildGeneNet(GuiParameters curParams)
Generic function to create gene networkvoid
NetworkBuilder.buildNet(List<String> list1, List<String> list2, List<String> nrCommonEntities, String src, GuiParameters params)
Builds a new disease-disease or gene-gene network.void
NetworkBuilder.buildNetWithEdgeAttributes(ArrayList<String> intList, ArrayList<String> disList, ArrayList<String> genList, ArrayList<String> scoreList, ArrayList<String> eiList, ArrayList<String> yearList, ArrayList<String> yearFinalList, GuiParameters params)
void
NetworkBuilder.buildVariantDiseaseNet(GuiParameters curParams)
Get the variant/disease net information from the database and call generic function to build netNetworkBuilder.expandGeneDiseaseNet(GuiParameters curParams, Map<String,Long> nodeMap)
Expands the selected gene disease network using the selected nodes as reference.NetworkBuilder.expandVariantDiseaseNet(GuiParameters curParams, Map<String,Long> nodeMap)
Expands the selected variant disease network using the selected nodes as reference.void
NetworkBuilder.initAdditionalStyleAttributes(GuiParameters<?,?> params)
Fills the attribute columns for the different type of networks.void
NetTask.setCurParams(GuiParameters curParams)
ModifierConstructorDescriptionNetAction(GuiParameters curParams)
NetAction(GuiParameters curParams, JTabbedPane pane)
NetTask(GuiParameters curParams)
NetworkBuilder(GuiParameters params)