uk.ac.ebi.cytocopter.internal.utils
Class CyNetworkUtils

java.lang.Object
  uk.ac.ebi.cytocopter.internal.utils.CyNetworkUtils

public class CyNetworkUtils
extends Object

Constructor Summary

CyNetworkUtils()

Method Summary

static void	createViewAndRegister(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar, org.cytoscape.model.CyNetwork cyNetwork)
static org.cytoscape.model.CyEdge	getCyEdge(org.cytoscape.model.CyNetwork cyNetwork, String edgeName)
static List<org.cytoscape.model.CyEdge>	getCyEdges(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar, String cyNetworkName)
static org.cytoscape.model.CyNetwork	getCyNetwork(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar, String networkName)
static org.cytoscape.model.CyNode	getCyNode(org.cytoscape.model.CyNetwork cyNetwork, String nodeName)
static String	getUniqueNetworkName(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar, String name)
static org.cytoscape.model.CyNetwork	readCyNetworkFromFile(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar, File cyNetworkFile)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CyNetworkUtils

public CyNetworkUtils()

Method Detail

getCyNetwork

public static org.cytoscape.model.CyNetwork getCyNetwork(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar,
                                                         String networkName)

getCyNode

public static org.cytoscape.model.CyNode getCyNode(org.cytoscape.model.CyNetwork cyNetwork,
                                                   String nodeName)

getCyEdge

public static org.cytoscape.model.CyEdge getCyEdge(org.cytoscape.model.CyNetwork cyNetwork,
                                                   String edgeName)

getCyEdges

public static List<org.cytoscape.model.CyEdge> getCyEdges(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar,
                                                          String cyNetworkName)

getUniqueNetworkName

public static String getUniqueNetworkName(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar,
                                          String name)

createViewAndRegister

public static void createViewAndRegister(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar,
                                         org.cytoscape.model.CyNetwork cyNetwork)

readCyNetworkFromFile

public static org.cytoscape.model.CyNetwork readCyNetworkFromFile(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar,
                                                                  File cyNetworkFile)