uk.ac.ebi.cytocopter.internal.ui.panels
Class ControlPanel

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  uk.ac.ebi.cytocopter.internal.ui.panels.ControlPanel

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible, org.cytoscape.application.swing.CytoPanelComponent

public class ControlPanel
extends JPanel
implements org.cytoscape.application.swing.CytoPanelComponent

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

JPanel	algorithmPanel
Map<String,JTextField>	configurationsMap
uk.ac.ebi.cyrface.internal.rinterface.rserve.RserveHandler	connection
org.cytoscape.service.util.CyServiceRegistrar	cyServiceRegistrar
File	dataFile
JLabel	dataLabel
JComboBox	dataPointCombo
JTextField	dataTextField
JLabel	dataTimePointLabel
JComboBox	formalismCombo
JLabel	formalismLabel
DefaultComboBoxModel	formalismModel
JComboBox	networkCombo
JLabel	networkLabel
DefaultComboBoxModel	networkModel
JButton	optimiseButton
JButton	preprocessButton

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

ControlPanel(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar)

Method Summary

Double	getAlgorithmPropertyValue(AlgorithmConfigurationsEnum property) Get Algorithm configuration property value defined in the control panel.
Component	getComponent()
org.cytoscape.application.swing.CytoPanelName	getCytoPanelName()
String	getFormalismValue() Get selected formalism from the JComboBox in the Cytocopter control panel
Icon	getIcon()
String	getMidasFilePath() Get MIDAS selected file absolute path
String	getNetworkValue() Get selected network from the JComboBox in the Cytocopter control panel
int	getNumberOfDataTimePoints() Get number of time points existing in the selected MIDAS file
String	getTimePointValue() Get selected timePoint from the JComboBox in the Cytocopter control panel
String	getTitle()
void	setTimePointComboBoxStatus()

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

cyServiceRegistrar

public org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar

connection

public uk.ac.ebi.cyrface.internal.rinterface.rserve.RserveHandler connection

networkLabel

public JLabel networkLabel

networkCombo

public JComboBox networkCombo

networkModel

public DefaultComboBoxModel networkModel

dataLabel

public JLabel dataLabel

dataTextField

public JTextField dataTextField

dataFile

public File dataFile

preprocessButton

public JButton preprocessButton

formalismLabel

public JLabel formalismLabel

formalismCombo

public JComboBox formalismCombo

formalismModel

public DefaultComboBoxModel formalismModel

dataTimePointLabel

public JLabel dataTimePointLabel

dataPointCombo

public JComboBox dataPointCombo

optimiseButton

public JButton optimiseButton

algorithmPanel

public JPanel algorithmPanel

configurationsMap

public Map<String,JTextField> configurationsMap

Constructor Detail

ControlPanel

public ControlPanel(org.cytoscape.service.util.CyServiceRegistrar cyServiceRegistrar)

Method Detail

setTimePointComboBoxStatus

public void setTimePointComboBoxStatus()

getNetworkValue

public String getNetworkValue()

Get selected network from the JComboBox in the Cytocopter control panel

Returns:

getTimePointValue

public String getTimePointValue()

Get selected timePoint from the JComboBox in the Cytocopter control panel

Returns:

getFormalismValue

public String getFormalismValue()

Get selected formalism from the JComboBox in the Cytocopter control panel

Returns:

getNumberOfDataTimePoints

public int getNumberOfDataTimePoints()

Get number of time points existing in the selected MIDAS file

Returns:

getMidasFilePath

public String getMidasFilePath()

Get MIDAS selected file absolute path

Returns:

getAlgorithmPropertyValue

public Double getAlgorithmPropertyValue(AlgorithmConfigurationsEnum property)

Get Algorithm configuration property value defined in the control panel. If the value defined by the user is not a valid double the default value of the property is used instead and the text field value is reseted.

Parameters:

property -

Returns:

getComponent

public Component getComponent()

Specified by:

getComponent in interface org.cytoscape.application.swing.CytoPanelComponent

getCytoPanelName

public org.cytoscape.application.swing.CytoPanelName getCytoPanelName()

Specified by:

getCytoPanelName in interface org.cytoscape.application.swing.CytoPanelComponent

getIcon

public Icon getIcon()

Specified by:

getIcon in interface org.cytoscape.application.swing.CytoPanelComponent

getTitle

public String getTitle()

Specified by:

getTitle in interface org.cytoscape.application.swing.CytoPanelComponent