Index (CyCL 3.6.1 API)

A B C E F G H I L M N O P R S T V W
All Classes All Packages

A

Accelerator - org.cytoscape.opencl.cycl.CyCLDevice.DeviceTypes
addProgram(String, String[], String[], HashMap<String, String>, boolean) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Compiles a program and its kernels, and stores it for further use.
addProgram(String, String, String[], HashMap<String, String>, boolean) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Compiles a program and its kernels, and stores it for further use.
addProgram(String, URL, String[], HashMap<String, String>, boolean) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Compiles a program and its kernels, and stores it for further use.
addressBits - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
assignSystemProperties() - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTask

B

benchmarkScore - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
bestBlockSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
bestWarpSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

C

cl_char - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_char, in bytes.
cl_char16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_char16, in bytes
cl_char2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_char2, in bytes
cl_char4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_char4, in bytes
cl_char8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_char8, in bytes
cl_command_queue - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_command_queue, in bytes
cl_context - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_context, in bytes
cl_device_id - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_device_id, in bytes
cl_double - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_double, in bytes.
cl_double16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_double16, in bytes
cl_double2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_double2, in bytes
cl_double4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_double4, in bytes
cl_double8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_double8, in bytes
cl_event - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_event, in bytes
cl_float - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_float, in bytes.
cl_float16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_float16, in bytes
cl_float2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_float2, in bytes
cl_float4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_float4, in bytes
cl_float8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_float8, in bytes
cl_half - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_half, in bytes.
cl_int - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_int, in bytes.
cl_int16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_int16, in bytes
cl_int2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_int2, in bytes
cl_int4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_int4, in bytes
cl_int8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_int8, in bytes
cl_kernel - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_kernel, in bytes
cl_long - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_long, in bytes.
cl_long16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_long16, in bytes
cl_long2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_long2, in bytes
cl_long4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_long4, in bytes
cl_long8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_long8, in bytes
cl_mem - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_mem, in bytes
cl_platform_id - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_platform_id, in bytes
cl_program - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_program, in bytes
cl_sampler - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_sampler, in bytes
cl_short - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_short, in bytes.
cl_short16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_short16, in bytes
cl_short2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_short2, in bytes
cl_short4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_short4, in bytes
cl_short8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_short8, in bytes
cl_uchar - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uchar, in bytes.
cl_uchar16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uchar16, in bytes
cl_uchar2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uchar2, in bytes
cl_uchar4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uchar4, in bytes
cl_uchar8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uchar8, in bytes
cl_uint - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uint, in bytes.
cl_uint16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uint16, in bytes
cl_uint2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uint2, in bytes
cl_uint4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uint4, in bytes
cl_uint8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_uint8, in bytes
cl_ulong - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ulong, in bytes.
cl_ulong16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ulong16, in bytes
cl_ulong2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ulong2, in bytes
cl_ulong4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ulong4, in bytes
cl_ulong8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ulong8, in bytes
cl_ushort - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ushort, in bytes.
cl_ushort16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ushort16, in bytes
cl_ushort2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ushort2, in bytes
cl_ushort4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ushort4, in bytes
cl_ushort8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a cl_ushort8, in bytes
clockFrequency - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
computeUnits - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
CPU - org.cytoscape.opencl.cycl.CyCLDevice.DeviceTypes
createBuffer(byte[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Allocates memory on this device and fills it with host data.
createBuffer(double[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Allocates memory on this device and fills it with host data.
createBuffer(float[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Allocates memory on this device and fills it with host data.
createBuffer(int[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Allocates memory on this device and fills it with host data.
createBuffer(long[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Allocates memory on this device and fills it with host data.
createBuffer(short[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Allocates memory on this device and fills it with host data.
createBuffer(Class<?>, int) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Allocates memory on this device without filling it with any data.
createTaskIterator() - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTaskFactory
CyActivator - Class in org.cytoscape.opencl.cycl
CyActivator() - Constructor for class org.cytoscape.opencl.cycl.CyActivator
CyCL - Class in org.cytoscape.opencl.cycl: Central OpenCL service that is initialized on startup and stores all available devices.
CyCL() - Constructor for class org.cytoscape.opencl.cycl.CyCL
CyCLBuffer - Class in org.cytoscape.opencl.cycl: Provides functionality associated with an OpenCL memory object.
CyCLBuffer(CyCLContext, byte[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer: Allocates device memory to fit all elements in data, and copies its contents
CyCLBuffer(CyCLContext, double[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer: Allocates device memory to fit all elements in data, and copies its contents
CyCLBuffer(CyCLContext, float[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer: Allocates device memory to fit all elements in data, and copies its contents
CyCLBuffer(CyCLContext, int[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer: Allocates device memory to fit all elements in data, and copies its contents
CyCLBuffer(CyCLContext, long[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer: Allocates device memory to fit all elements in data, and copies its contents
CyCLBuffer(CyCLContext, short[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer: Allocates device memory to fit all elements in data, and copies its contents
CyCLBuffer(CyCLContext, Class<?>, int) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer: Allocates [sizeof(type) * elements] bytes in device memory without copying any host data
CyCLContext - Class in org.cytoscape.opencl.cycl
CyCLContext(CyCLDevice) - Constructor for class org.cytoscape.opencl.cycl.CyCLContext
CyCLDevice - Class in org.cytoscape.opencl.cycl: Represents functionality associated with a single OpenCL device.
CyCLDevice.DeviceTypes - Enum in org.cytoscape.opencl.cycl
CyCLException - Exception in org.cytoscape.opencl.cycl
CyCLException() - Constructor for exception org.cytoscape.opencl.cycl.CyCLException
CyCLException(String) - Constructor for exception org.cytoscape.opencl.cycl.CyCLException
CyCLException(String, Throwable) - Constructor for exception org.cytoscape.opencl.cycl.CyCLException
CyCLException(Throwable) - Constructor for exception org.cytoscape.opencl.cycl.CyCLException
CyCLKernel - Class in org.cytoscape.opencl.cycl
CyCLKernel(CyCLContext, CyCLProgram, String) - Constructor for class org.cytoscape.opencl.cycl.CyCLKernel
CyCLLocalSize - Class in org.cytoscape.opencl.cycl: Specifies the amount of local memory in an argument of a kernel call.
CyCLLocalSize(Long) - Constructor for class org.cytoscape.opencl.cycl.CyCLLocalSize: Initializes the object with the specified amount of bytes.
CyCLProgram - Class in org.cytoscape.opencl.cycl
CyCLProgram(CyCLContext, CyCLDevice, String[], String[], HashMap<String, String>, boolean) - Constructor for class org.cytoscape.opencl.cycl.CyCLProgram
CyCLProgram(CyCLContext, CyCLDevice, String, String[], HashMap<String, String>, boolean) - Constructor for class org.cytoscape.opencl.cycl.CyCLProgram
CyCLProgram(CyCLContext, CyCLDevice, URL, String[], HashMap<String, String>, boolean) - Constructor for class org.cytoscape.opencl.cycl.CyCLProgram
CyCLSettingsTask - Class in org.cytoscape.opencl.cycl
CyCLSettingsTask(CyProperty<Properties>) - Constructor for class org.cytoscape.opencl.cycl.CyCLSettingsTask
CyCLSettingsTaskFactory - Class in org.cytoscape.opencl.cycl
CyCLSettingsTaskFactory(CyProperty<Properties>) - Constructor for class org.cytoscape.opencl.cycl.CyCLSettingsTaskFactory

E

elementSize() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Returns the number of bytes associated with the CyCLBuffer's element type.
execute(long[], long[], Object...) - Method in class org.cytoscape.opencl.cycl.CyCLKernel
executeWithOffset(long[], long[], long[], Object...) - Method in class org.cytoscape.opencl.cycl.CyCLKernel

F

finalize() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Frees all device memory associated with the buffer.
finalize() - Method in class org.cytoscape.opencl.cycl.CyCLContext
finalize() - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Releases all native resources associated with the device.
finalize() - Method in class org.cytoscape.opencl.cycl.CyCLKernel
finalize() - Method in class org.cytoscape.opencl.cycl.CyCLProgram
finishQueue() - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Pauses the calling thread until all items in the device's command queue have been finished.
forceAddProgram(String, URL, String[], HashMap<String, String>, boolean) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Compiles a program and its kernels, and stores it, possibly replacing (and destroying) an old instance.
free() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Frees all device memory associated with the buffer.

G

getAll(String) - Static method in class org.cytoscape.opencl.cycl.CyCLDevice: Initializes all devices present in the system, removes duplicates (same device, different platforms), and returns them as a list.
getBestBlockSize(long) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Suggests an optimal block (work item) size for the given global item count.
getContext() - Method in class org.cytoscape.opencl.cycl.CyCLContext
getDevice() - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Gets the underlying LWJGL device ID.
getDevices() - Static method in class org.cytoscape.opencl.cycl.CyCL
getDeviceSpecificDefines() - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Gets a dictionary of device-specific values that will be defined in the compiled program
getFromDevice(byte[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(byte[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(double[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(double[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(float[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(float[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(int[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(int[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(long[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(long[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(short[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getFromDevice(short[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from device to host memory.
getKernel(String) - Method in class org.cytoscape.opencl.cycl.CyCLProgram
getMemObject() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Gets the underlying memory object.
getPlatform() - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Gets the underlying LWJGL platform ID.
getProgram() - Method in class org.cytoscape.opencl.cycl.CyCLProgram
getProgram(String) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Attempts to find a pre-compiled program with the given name.
getQueue() - Method in class org.cytoscape.opencl.cycl.CyCLContext
getSize() - Method in class org.cytoscape.opencl.cycl.CyCLLocalSize: Gets the amount of bytes specified by the object.
getTitle() - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTask
getValidationState(Appendable) - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTask
globalMemSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
GPU - org.cytoscape.opencl.cycl.CyCLDevice.DeviceTypes

H

hasProgram(String) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Determines if a program with the given name has already been compiled and stored.

I

image2DMaxSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
image3DMaxSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
initialize(CyApplicationConfiguration, CyProperty<Properties>) - Static method in class org.cytoscape.opencl.cycl.CyCL: Loads all necessary native libraries, initializes LWJGL and populates the device list.
initSync - Static variable in class org.cytoscape.opencl.cycl.CyCL

L

localMemSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
localMemType - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

M

makePreferred(String) - Static method in class org.cytoscape.opencl.cycl.CyCL
maxConstBufferSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
maxMallocSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
maxReadImageArgs - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
maxWorkGroupSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
maxWorkItemSizes - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
maxWriteImageArgs - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

N

name - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

O

org.cytoscape.opencl.cycl - package org.cytoscape.opencl.cycl

P

performBenchmark(boolean) - Method in class org.cytoscape.opencl.cycl.CyCLDevice: Runs a simple benchmark on the device.
platformName - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
POINTER - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a native pointer, in bytes
preferredNameList - Variable in class org.cytoscape.opencl.cycl.CyCLSettingsTask
prefWidthChar - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
prefWidthDouble - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
prefWidthFloat - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
prefWidthInt - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
prefWidthLong - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
prefWidthShort - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

R

run(TaskMonitor) - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTask

S

setFromDevice(CyCLBuffer) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from another device buffer to this one.
setFromDevice(CyCLBuffer, long, long, long) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from another device buffer to this one.
setFromHost(byte[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(byte[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(double[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(double[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(float[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(float[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(int[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(int[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(long[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(long[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(short[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
setFromHost(short[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Copies data from host to device memory.
size_t - Static variable in class org.cytoscape.opencl.cycl.Sizeof: Size of a size_t, in bytes
sizeInBytes() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer: Returns the overall buffer size in bytes.
Sizeof - Class in org.cytoscape.opencl.cycl: Size constants for scalar and vector data types.
start(BundleContext) - Method in class org.cytoscape.opencl.cycl.CyActivator
supportsECC - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
supportsImages - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
sync - Static variable in class org.cytoscape.opencl.cycl.CyCL

T

type - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

V

valueOf(String) - Static method in enum org.cytoscape.opencl.cycl.CyCLDevice.DeviceTypes: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.cytoscape.opencl.cycl.CyCLDevice.DeviceTypes: Returns an array containing the constants of this enum type, in the order they are declared.
vendor - Variable in class org.cytoscape.opencl.cycl.CyCLDevice
version - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

W

workItemDimensions - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

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