Package org.cy3sbml.gui

package org.cy3sbml.gui
  • Class
    Description
    ArchiveHtml
    The HTML of the COMBINE archive a document was imported from: the archive name and title, its description and creators, and its files (location, format, master), the imported SBML file in bold.
    Browser
    Browser of the cy3sbml panel: a JavaFX WebView showing the rendered HTML and the bundled pages, embedded in Swing with a JFXPanel.
    BrowserHyperlinkListener
    Handles the links clicked in the cy3sbml panel.
    GUIConstants
    Constants of the GUI: the resources, icons, toolbar positions and descriptions of the actions, and the HTML fragments of the info panel from gui/linktemplate.html.
    InfoPanel
    The panel that shows the SBML information, see WebViewPanel.
    KeyValuePairHtml
    The HTML of the key-value pairs of an SBase (fbc v3, a listOfKeyValuePairs in the annotation): a table with a row per pair, the key (with id and name, if set), and the value with the uri defining the key, as a link if it is a URL.
    LatestTaskExecutor
    Runs render tasks one at a time on a single daemon thread, keeping only the most recently submitted task alive, and coalescing a resubmission of the task that is already pending or running.
    PanelUpdater
    Renders one previously-resolved render target (see PanelUpdater.resolveTarget(org.cytoscape.model.CyNetwork, org.cy3sbml.SBMLManager)) into the panel.
    SBaseHTMLFactory
    Creates HTML information for given SBase.
    SBaseHTMLThread
    Builds the HTML information for a set of SBase objects, via web-service lookups (OLS, UniProt, ChEBI), and posts it to a panel.
    UncertaintyHtml
    The HTML of the uncertainties of an SBase (distrib package): per uncertainty its id and name and a table of its uncertainty parameters and spans (type and value, like the attribute table), with the nested parameters after their parent.
    WebViewPanel
    The cy3sbml panel in the Cytoscape results panel (east): a JavaFX Browser that shows the SBML information of the current network and the selected node, or the help and examples pages.