## Visual Legend

Filter Edges

### Edge Type

### Color

IN_SAME_COMPONENT |
Edge is drawn if the first entity is a component of the second entity, which is a complex. This interaction is transient in the sense that A COMPONENT_OF B and B COMPONENT_OF C implies A COMPONENT_OF C. This interaction is undirected.
COMPONENT_OF |
Edge is drawn if two entities belong to at least one molecular complex. This does not necessarily mean they interact directly. In a complex with n molecules, this rule will create a clique composed of n(n-1)/2 interactions. This interaction is directed.
CO_CONTROL |
Edge is drawn if the first and second entities have control over the same process. This interaction is undirected."
METABOLIC_CATALYSIS |
Edge is drawn if the first entity catalyses a reaction that either consumes or produces the second entity. More specifically, this rule will find an interaction between two entities A and B if and only if A controls a conversion which B participates and appears only on the left or right side of the conversion but not both. This interaction is directed.
STATE_CHANGE |
Edge is drawn if the first entity catalyses a reaction that either consumes or produces the second entity. More specifically, this rule will find an interaction between two entities A and B if and only if A controls a conversion which B participates and appears both on the left or right side of the conversion. This interaction is directed.
REACTS_WITH |
Edge is drawn if both A and B participates in a conversion as substrates or products. Controllers are not included. This interaction is undirected.
INTERACTS_WITH |
Edge is drawn if both A and B participates in an interaction as participants. Controllers are not included. This interaction is undirected.
SEQUENTIAL_CATALYSIS |
Edge is drawn if A and B catalyzes two conversions that are connected via a common molecule, and where potentially that common substrate is produced by the former and consumed by the latter. This interaction is directed.
GENERIC_OF |
Edge is drawn if in the original model a molecule is a member of a generic group. In BioPAX L3, such groups can be defined in many ways using EntityReference, Complex, PhysicalEntity (and their sub-classes) and corresponding BioPAX properties: memberEntityReference, component, memberPhysicalEntity This interaction is directed.

### Node Type

### Shape & Color

Entity References (e.g, ProteinReference) | ELLIPSE
Complex | HEXAGON
GenericProteinReference | OCTAGON
GenericSmallMoleculeReference | OCTAGON
Generic DNA/RNA References | ROUND_RECTANGLE