Synchronous Visualizer
SyNDI (Synchronous Network Data Integration framework) [1] is a framework for synchronous network visualization and network analysis. It comprises two main tools: * a Cytoscape app called SyncVis (Synchronous Visualizer) for synchronous visualization of multiple networks * A set of network analysis tools. Galaxy [2-4] is used as a central platform for these tools, but they can be also run on separate applications such as the Cytoscape app BINGO ([]). References: [1] Lindfors, Erno & C. J. van Dam, Jesse & Ming Chi Lam, Carolyn & Zondervan, Niels & Martins dos Santos, Vitor & Suarez-Diez, María. (2018). SyNDI: Synchronous network data integration framework. BMC Bioinformatics. 19. 10.1186/s12859-018-2426-5. [2] Goecks J, Nekrutenko A, Taylor J, Galaxy Team. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 2010;11:R86. [3] Blankenberg D, Von Kuster G, Coraor N, Ananda G, Lazarus R, Mangan M, et al. Galaxy: a web-based genome analysis tool for experimentalists. Curr. Protoc. Mol. Biol. 2010;Chapter 19:Unit 19.10.1-21. [4] Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, et al. Galaxy: a platform for interactive large-scale genome analysis. Genome Res. 2005;15:1451–5.


Works with Cytoscape 3.6


Works with Cytoscape 3.6


Version 1.0.2

Released 22 Jul 2019

Works with Cytoscape 3.6

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