Calculate network, node, and edge statistics for any connected network
*As of Cytoscape 3.8, Analyzer is bundled with the program and need not be added via the Application Manager* **Analyzer** is a scriptable version of the core app: *Network Analyzer*. It provides the functionality to execute algorithms to compute *shortest paths*, *centrality measurements*, *self-loops*, *clustering coefficients*, etc. for both **directed and undirected graphs**. Directed graphs show separate *inward and outward degrees*, as well as the combined *Edge Count*. Analyzer omits the display of graphs to show distributions and scatter plots. This functionality is provided in a new app, *cyChart*, which augments the graph functionality with the ability to create filters interactively. To invoke *Analyzer*, select the command **Analyze Network** from the **Tools** menu. The app will ask if the network should be treated as directed or undirected. Upon execution, the app will add a Results Panel showing the network level statistics, and will add columns to the node and edge tables for the attributes it computes. The following **Commands** are available to invoke Analyzer from scripts: analyzer analyze #Calculate statistics on the current network analyzer version #Display the analyzer version The algorithms used are the same as Network Analyzer and is found here. [ ]


Works with Cytoscape 3.8

Release Notes

put statistics in a hidden table, instead of default network table


Works with Cytoscape 3.7


Works with Cytoscape 3.7


Works with Cytoscape 3.7


Version 4.3.1

Released 17 Jan 2020

Works with Cytoscape 3.8

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