XlinkCyNET

Generate residue-to-residue connections provided by XL-MS in protein interaction networks
**XlinkCyNET** is an open-source Java plugin that generates residue-to-residue connections provided by XL-MS in protein interaction networks. Importantly, it provides an interactive interface for the exploration of cross-links and offers various options to display protein domains. XlinkCyNET works well in complex networks containing thousands of proteins. A [video](https://www.youtube.com/embed/yLGUnLHy8rI?rel=0&amp;showinfo=0) demonstrating how the application works can be found on the [software website](https://www.theliulab.com/software/xlinkcynet).<br/> A detailed [tutorial](http://dx.doi.org/10.21203/rs.3.pex-1172/v1), which explains step by step the functionality of all parameters is available at *Protocol Exchange*. **Features:** <br/><br/> &#8618; Visualize protein-protein interaction network based on cross-linking mass spectrometry data<br/> &#8618; Apply a residue-to-residue layout to a Cytoscape interaction network &#8618; Annotate protein domains to all nodes in the network <hr/> <p>Don't hesitate to send us any comments, questions or bug reports to: <img src="http://diogobor.droppages.com/emailBorderless.png" alt="email"/></p> Any feedback is welcomed!<br/><br/> Have fun! :)

1.1.0

Works with Cytoscape 3.8

Release Notes

&#8618; Save *Settings* parameters in Cytoscape session <br/> &#8618; Updated *About* window

1.0.7

Works with Cytoscape 3.8

Release Notes

&#8618; Initial release.

CYTOSCAPE 3

Version 1.1.0

License Click here

Released 19 Nov 2020

Works with Cytoscape 3.8

Download Stats Click here